.. _cli-reference:

CLI Reference
=============

Planning & Setup Commands
-------------------------
.. toctree::
    :maxdepth: 1

    charge_molecules
    setup_task_campaign
    plan_rhfe_network
    plan_rbfe_network
    view_ligand_network

Execution Commands
------------------
.. toctree::
    :maxdepth: 1

    run_task
    status
    update_task_db
    quickrun

Results Gathering Commands
--------------------------

.. toctree::
    :maxdepth: 1

    gather
    to_legacy_json

Miscellaneous Commands
----------------------
.. toctree::
    :maxdepth: 1

    test